X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sequencecountparser.cpp;h=37eb4e7f5256617bd3917428616a897ee14706e4;hp=4ba60918bd7f064ad3bfb71c08574ce4c2c167aa;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=c7e8c2d15bd7cedcfdf18675cb0ea1a0dcd0e3c0

diff --git a/sequencecountparser.cpp b/sequencecountparser.cpp
index 4ba6091..37eb4e7 100644
--- a/sequencecountparser.cpp
+++ b/sequencecountparser.cpp
@@ -16,7 +16,7 @@ SequenceCountParser::SequenceCountParser(string countfile, string fastafile) {
 		
 		//read count file
 		CountTable countTable;
-		countTable.readTable(countfile);
+		countTable.readTable(countfile, true);
 		
 		//initialize maps
 		namesOfGroups = countTable.getNamesOfGroups();
@@ -206,7 +206,7 @@ int SequenceCountParser::getSeqs(string g, string filename, bool uchimeFormat=fa
 					
 					if(m->control_pressed) { out.close(); m->mothurRemove(filename); return 1; }
 					
-					out << ">" << nameVector[i].name  << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl;
+					out << ">" << nameVector[i].name << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl; //
 				}
 				
 			}else {