X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sequence.cpp;h=96662bc36d4b77e1cb8b7a884f4e8460969033f4;hp=a359607a3ea11fa118efed129407ee608d4903e5;hb=a9dbc22713bfc056a797361dd757b1a5c98e1c01;hpb=e10c72304ee071c0c40e0218a06d89dc4731cbc2

diff --git a/sequence.cpp b/sequence.cpp
index a359607..96662bc 100644
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -300,7 +300,7 @@ string Sequence::getSequenceString(ifstream& fastaFile, int& numAmbig) {
 			if(letter == '>'){
 				fastaFile.putback(letter);
 				break;
-			}
+			}else if (letter == ' ') {;}
 			else if(isprint(letter)){
 				letter = toupper(letter);
 				if(letter == 'U'){letter = 'T';}
@@ -354,7 +354,7 @@ string Sequence::getSequenceString(istringstream& fastaFile, int& numAmbig) {
 			if(letter == '>'){
 				fastaFile.putback(letter);
 				break;
-			}
+			}else if (letter == ' ') {;}
 			else if(isprint(letter)){
 				letter = toupper(letter);
 				if(letter == 'U'){letter = 'T';}