X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=seqerrorcommand.h;h=aac17b6979910ebc733be840eb37ec720ecc1105;hp=9f400b328c93aa8d03bd176283b3df17974dc0f4;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=10f24e97c62351b0611159a13e116f359deade96

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index 9f400b3..aac17b6 100644
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -13,6 +13,7 @@
 #include "command.hpp"
 #include "sequence.hpp"
 #include "referencedb.h"
+#include "counttable.h"
 
 
 class SeqErrorCommand : public Command {
@@ -90,7 +91,7 @@ private:
 	int driver(string, string, string, string, string, string, linePair, linePair, linePair);
 	int createProcesses(string, string, string, string, string, string);
 
-	string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir;
+	string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir, countfile;
 	double threshold;
 	bool ignoreChimeras, save, aligned;
 	int numRefs, processors;