X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sensspeccommand.h;h=bfa329131f341e6a0750a318cc237ead77bbd8a4;hp=7d85a39bea25ced837551589cf21e2c431c8d7ca;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=3504e4e2feeb05aabb0c79aa42cb696522030924

diff --git a/sensspeccommand.h b/sensspeccommand.h
index 7d85a39..bfa3291 100644
--- a/sensspeccommand.h
+++ b/sensspeccommand.h
@@ -48,7 +48,7 @@ private:
 	set<string> labels; //holds labels to be used
 
 	long int truePositives, falsePositives, trueNegatives, falseNegatives;
-	bool abort, allLines;
+	bool abort, allLines, square;
 	bool hard;
 	//string lineLabel;
 	double cutoff;
@@ -59,6 +59,7 @@ private:
 	int process(map<string, int>&, string, bool&, string&);
 	int process(set<string>&, string, bool&, string&, int);
     string preProcessList();
+    bool testFile();
 
 };