X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=screenseqscommand.h;h=18a55ac1b584dc0bce91c4f0f950d164e03fb983;hp=e2906900980ac7d1897b9e0976435401fb35c8be;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=c85db0a4be3a1f8037a71a23ca73f9762184e28a

diff --git a/screenseqscommand.h b/screenseqscommand.h
index e290690..18a55ac 100644
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -74,8 +74,8 @@ private:
 
 	bool abort;
 	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy, countfile, contigsreport, summaryfile;
-	int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria, minOverlap, oStart, oEnd, mismatches, maxN, maxInsert;
-    float minSim, minScore;
+	int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, minOverlap, oStart, oEnd, mismatches, maxN, maxInsert;
+    float minSim, minScore, criteria;
 	vector<string> outputNames;
 	vector<string> optimize;
 	map<string, int> nameMap;
@@ -449,10 +449,10 @@ static DWORD WINAPI MySumScreenThreadFunction(LPVOID lpParam){
     
 			}		
             //report progress
-			if((i+1) % 100 == 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(i+1)); pDataArray->m->mothurOutEndLine();		}
+			if((i+1) % 100 == 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(i+1)+"\n"); 		}
 		}
 		//report progress
-		if((pDataArray->count) % 100 != 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();		}
+		if((pDataArray->count) % 100 != 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); 		}