X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=screenseqscommand.cpp;h=bc375dee4e36de59fa2e8ae66d3516aa41c9339b;hp=5789fd0665f849822ec8d8c365de3a26e65b77ef;hb=49b8297d25caae7ad4cf1e5208a4a66fdfe071fe;hpb=786d5631d9cd5baa6ed6ef16f8b4b384cbc7470f diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp index 5789fd0..bc375de 100644 --- a/screenseqscommand.cpp +++ b/screenseqscommand.cpp @@ -51,10 +51,10 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option){ //check for optional parameter and set defaults // ...at some point should added some additional type checking... string temp; - temp = validParameter.validFile(parameters, "start", false); if (temp == "not found") { temp = "-1"; } + temp = validParameter.validFile(parameters, "start", false); if (temp == "not found") { temp = "-1"; } convert(temp, startPos); - temp = validParameter.validFile(parameters, "end", false); if (temp == "not found") { temp = "-1"; } + temp = validParameter.validFile(parameters, "end", false); if (temp == "not found") { temp = "-1"; } convert(temp, endPos); temp = validParameter.validFile(parameters, "maxambig", false); if (temp == "not found") { temp = "-1"; } @@ -63,10 +63,10 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option){ temp = validParameter.validFile(parameters, "maxhomop", false); if (temp == "not found") { temp = "-1"; } convert(temp, maxHomoP); - temp = validParameter.validFile(parameters, "minlength", false); if (temp == "not found") { temp = "-1"; } + temp = validParameter.validFile(parameters, "minlength", false); if (temp == "not found") { temp = "-1"; } convert(temp, minLength); - temp = validParameter.validFile(parameters, "maxlength", false); if (temp == "not found") { temp = "-1"; } + temp = validParameter.validFile(parameters, "maxlength", false); if (temp == "not found") { temp = "-1"; } convert(temp, maxLength); }