X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=removeseqscommand.cpp;h=c0e04d569604ee0aa67c29ceefbda06275a2df9d;hp=afba6514e0ea1360ef78f65d9470f89e63e18d53;hb=191ae1be0679d5cf4eda950b3b1bf26fb7dd503d;hpb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd

diff --git a/removeseqscommand.cpp b/removeseqscommand.cpp
index afba651..c0e04d5 100644
--- a/removeseqscommand.cpp
+++ b/removeseqscommand.cpp
@@ -26,6 +26,7 @@ vector<string> RemoveSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 RemoveSeqsCommand::RemoveSeqsCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["fasta"] = tempOutNames;