X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=removeotuscommand.h;h=a7fcf0eaa1316203f0ec65c79094a2ef6f809ac3;hp=cb017b450e78123ea2cd32bbbf93675cd1bc15b5;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77

diff --git a/removeotuscommand.h b/removeotuscommand.h
index cb017b4..a7fcf0e 100644
--- a/removeotuscommand.h
+++ b/removeotuscommand.h
@@ -25,9 +25,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "remove.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; }
-	
+	string getDescription()		{ return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
@@ -37,7 +40,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);