X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=removeotuscommand.h;fp=removeotuscommand.h;h=3a52a39f120a0d2af788478df3a590c64a7f9306;hp=6a7cf8a1e55fa1a5fe5915b4cb6da1c3150729ef;hb=49d2b7459c5027557564b21e9487dadafbbbdc96;hpb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4 diff --git a/removeotuscommand.h b/removeotuscommand.h index 6a7cf8a..3a52a39 100644 --- a/removeotuscommand.h +++ b/removeotuscommand.h @@ -25,6 +25,7 @@ public: vector setParameters(); string getCommandName() { return "remove.otus"; } string getCommandCategory() { return "OTU-Based Approaches"; } + string getOutputFileNameTag(string, string); string getHelpString(); string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; } string getDescription() { return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; } @@ -38,7 +39,6 @@ private: vector outputNames, Groups; GroupMap* groupMap; - void readAccnos(); int readListGroup(); int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);