X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=removeotulabelscommand.cpp;h=fa98b86dde528f0190129f9b3939148e6d72f9a2;hp=148758a369f77f85e8c9832d69b3916e13365396;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=c85db0a4be3a1f8037a71a23ca73f9762184e28a

diff --git a/removeotulabelscommand.cpp b/removeotulabelscommand.cpp
index 148758a..fa98b86 100644
--- a/removeotulabelscommand.cpp
+++ b/removeotulabelscommand.cpp
@@ -234,6 +234,8 @@ int RemoveOtuLabelsCommand::execute(){
         
         //get labels you want to keep
 		labels = m->readAccnos(accnosfile);
+        
+        if (m->debug) { m->mothurOut("[DEBUG]: numlabels = " + toString(labels.size()) + "\n"); }
 		
 		if (m->control_pressed) { return 0; }
 		
@@ -289,7 +291,7 @@ int RemoveOtuLabelsCommand::readClassifyOtu(){
 		int removedCount = 0;
 		
         //read headers
-        string headers = m->getline(in);
+        string headers = m->getline(in); m->gobble(in);
         out << headers << endl;
         
         while (!in.eof()) {
@@ -301,6 +303,8 @@ int RemoveOtuLabelsCommand::readClassifyOtu(){
             
             in >> otu >> size >> tax; m->gobble(in);
             
+            if (m->debug) { m->mothurOut("[DEBUG]: " + otu + toString(size) + tax + "\n"); }
+            
             if (labels.count(otu) == 0) {
 				wroteSomething = true;
                 out << otu << '\t' << size << '\t' << tax << endl;
@@ -341,7 +345,7 @@ int RemoveOtuLabelsCommand::readOtuAssociation(){
 		int removedCount = 0;
 		
         //read headers
-        string headers = m->getline(in);
+        string headers = m->getline(in); m->gobble(in);
         out << headers << endl;
         
         while (!in.eof()) {
@@ -395,7 +399,7 @@ int RemoveOtuLabelsCommand::readCorrAxes(){
 		int removedCount = 0;
 		
         //read headers
-        string headers = m->getline(in);
+        string headers = m->getline(in); m->gobble(in);
         out << headers << endl;
         
         while (!in.eof()) {