X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=rabundvector.hpp;h=c7222291e714d3b23879e594a8fcf51bc9ce331d;hp=a0807e5126b62969c967a49e96cb11299302f21c;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05

diff --git a/rabundvector.hpp b/rabundvector.hpp
index a0807e5..c722229 100644
--- a/rabundvector.hpp
+++ b/rabundvector.hpp
@@ -3,11 +3,25 @@
 
 #include "datavector.hpp"
 
+/*  Data Structure for a rabund file.
+    This class is a child to datavector.  It represents OTU information at a certain distance. 
+	A rabundvector can be converted into and ordervector, listvector or sabundvector.
+	Each member of the internal container "data" represents an individual OTU.
+	So data[0] = 6, because there are six member in that OTU.
+	example: listvector		=	a,b,c,d,e,f		g,h,i		j,k		l		m  
+			 rabundvector	=	6				3			2		1		1
+			 sabundvector	=	2		1		1		0		0		1
+			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
+
+//class SAbundVector;
+//class OrderVector;
+
 class RAbundVector : public DataVector {
 	
 public:
 	RAbundVector();
 	RAbundVector(int);
+	RAbundVector(vector<int>, int, int, int);
 //	RAbundVector(const RAbundVector&);
 	RAbundVector(string, vector<int>);
 	RAbundVector(const RAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
@@ -24,11 +38,17 @@ public:
 	void pop_back();
 	void resize(int);
 	int size();
+	void quicksort();
+	int sum();
+	int sum(int);
+	int numNZ();
+	void clear();
 	vector<int>::reverse_iterator rbegin();
 	vector<int>::reverse_iterator rend();
 	
 	void print(ostream&);
 	void print(string, ostream&);
+	void nonSortedPrint(ostream&);
 	
 	RAbundVector getRAbundVector();
 	SAbundVector getSAbundVector();