X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=rabundvector.hpp;h=c7222291e714d3b23879e594a8fcf51bc9ce331d;hp=327b29b5dc8fa881ca8f8f543c1f5f293974cda8;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=fd282e6b4be2560f5b1bd154a9e8d24b798eefaf

diff --git a/rabundvector.hpp b/rabundvector.hpp
index 327b29b..c722229 100644
--- a/rabundvector.hpp
+++ b/rabundvector.hpp
@@ -3,7 +3,8 @@
 
 #include "datavector.hpp"
 
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
+/*  Data Structure for a rabund file.
+    This class is a child to datavector.  It represents OTU information at a certain distance. 
 	A rabundvector can be converted into and ordervector, listvector or sabundvector.
 	Each member of the internal container "data" represents an individual OTU.
 	So data[0] = 6, because there are six member in that OTU.
@@ -12,11 +13,15 @@
 			 sabundvector	=	2		1		1		0		0		1
 			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
 
+//class SAbundVector;
+//class OrderVector;
+
 class RAbundVector : public DataVector {
 	
 public:
 	RAbundVector();
 	RAbundVector(int);
+	RAbundVector(vector<int>, int, int, int);
 //	RAbundVector(const RAbundVector&);
 	RAbundVector(string, vector<int>);
 	RAbundVector(const RAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
@@ -33,11 +38,17 @@ public:
 	void pop_back();
 	void resize(int);
 	int size();
+	void quicksort();
+	int sum();
+	int sum(int);
+	int numNZ();
+	void clear();
 	vector<int>::reverse_iterator rbegin();
 	vector<int>::reverse_iterator rend();
 	
 	void print(ostream&);
 	void print(string, ostream&);
+	void nonSortedPrint(ostream&);
 	
 	RAbundVector getRAbundVector();
 	SAbundVector getSAbundVector();