X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=rabundvector.hpp;h=c7222291e714d3b23879e594a8fcf51bc9ce331d;hp=2a866bcbc4a39cf76c99885763f801e837d3570c;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=eb1c88346fb246e95a6b38935b103f95e38b82ca

diff --git a/rabundvector.hpp b/rabundvector.hpp
index 2a866bc..c722229 100644
--- a/rabundvector.hpp
+++ b/rabundvector.hpp
@@ -3,7 +3,8 @@
 
 #include "datavector.hpp"
 
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
+/*  Data Structure for a rabund file.
+    This class is a child to datavector.  It represents OTU information at a certain distance. 
 	A rabundvector can be converted into and ordervector, listvector or sabundvector.
 	Each member of the internal container "data" represents an individual OTU.
 	So data[0] = 6, because there are six member in that OTU.
@@ -12,6 +13,9 @@
 			 sabundvector	=	2		1		1		0		0		1
 			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
 
+//class SAbundVector;
+//class OrderVector;
+
 class RAbundVector : public DataVector {
 	
 public:
@@ -38,11 +42,13 @@ public:
 	int sum();
 	int sum(int);
 	int numNZ();
+	void clear();
 	vector<int>::reverse_iterator rbegin();
 	vector<int>::reverse_iterator rend();
 	
 	void print(ostream&);
 	void print(string, ostream&);
+	void nonSortedPrint(ostream&);
 	
 	RAbundVector getRAbundVector();
 	SAbundVector getSAbundVector();