X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=qualityscores.h;h=500d3e98db79b934effee830b65f54afb0023af3;hp=77c3ee0d52beefad645e7ecd87ff19327b137c2d;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=7a18f1438113f6c52c66f97ae0044cfa365dd221

diff --git a/qualityscores.h b/qualityscores.h
index 77c3ee0..500d3e9 100644
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -36,9 +36,9 @@ public:
 	void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
 	void updateForwardMap(vector<vector<int> >&, int, int, int);
 	void updateReverseMap(vector<vector<int> >&, int, int, int);
-    void setName(string n) { seqName = n; }
+    void setName(string n); 
     void setScores(vector<int> qs) { qScores = qs; seqLength = qScores.size(); }
-    
+    vector<int> getScores() { return qScores; }
 	
 private:
 	
@@ -48,6 +48,8 @@ private:
 	
 	string seqName;
 	int seqLength;
+    
+    string getSequenceName(ifstream&);
 };
 	
 /**************************************************************************************************/