X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=preclustercommand.h;h=d8ee57de9424e623d0455e0327e6f636ce569135;hp=7bbb5a7f448351d1bf72616e3c40f7f10b41eda4;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b

diff --git a/preclustercommand.h b/preclustercommand.h
index 7bbb5a7..d8ee57d 100644
--- a/preclustercommand.h
+++ b/preclustercommand.h
@@ -32,13 +32,15 @@ class PreClusterCommand : public Command {
 public:
 	PreClusterCommand(string);
 	PreClusterCommand();
-	~PreClusterCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();	
-	void help();
+	~PreClusterCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "pre.cluster";				}
+	string getCommandCategory()		{ return "Sequence Processing";		}
+	string getHelpString();	
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	int diffs, length;