X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=preclustercommand.cpp;h=c2564c1f769a835fd85559f10811672eb6a34e0d;hp=c0679155de1514a9ebb6845368b899140718b8d3;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=e0c50fc42e953dbe258feb9bc1d1d7dc10fafff0 diff --git a/preclustercommand.cpp b/preclustercommand.cpp index c067915..c2564c1 100644 --- a/preclustercommand.cpp +++ b/preclustercommand.cpp @@ -44,7 +44,7 @@ string PreClusterCommand::getHelpString(){ helpString += "The group parameter allows you to provide a group file so you can cluster by group. \n"; helpString += "The count parameter allows you to provide a count file so you can cluster by group. \n"; helpString += "The diffs parameter allows you to specify maximum number of mismatched bases allowed between sequences in a grouping. The default is 1.\n"; - helpString += "The topdown parameter allows you to specify whether to cluster from largest abundance to smallest or smallest to largest. Default=T, meanging largest to smallest.\n"; + helpString += "The topdown parameter allows you to specify whether to cluster from largest abundance to smallest or smallest to largest. Default=T, meaning largest to smallest.\n"; helpString += "The pre.cluster command should be in the following format: \n"; helpString += "pre.cluster(fasta=yourFastaFile, names=yourNamesFile, diffs=yourMaxDiffs) \n"; helpString += "Example pre.cluster(fasta=amazon.fasta, diffs=2).\n";