X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=preclustercommand.cpp;h=23d738650f0e8d6aa84caff684c73becb93cdb70;hp=32080870d4be38de900e5b2b881c6d360faebc32;hb=57b3c96832667c1b70d4d526331f52e3d49e8237;hpb=17fe3208075e55133789b247c062e6474f7439b0

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index 3208087..23d7386 100644
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -217,14 +217,15 @@ int PreClusterCommand::execute(){
 			m->mothurOutEndLine(); 
 			m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
 			m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); 
-			
+			m->mothurCalling = true;
+            
 			Command* uniqueCommand = new DeconvoluteCommand(inputString);
 			uniqueCommand->execute();
 			
 			map<string, vector<string> > filenames = uniqueCommand->getOutputFiles();
 			
 			delete uniqueCommand;
-			
+			m->mothurCalling = false;
 			m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
 			
 			m->renameFile(filenames["fasta"][0], newFastaFile);