X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=pipelinepdscommand.h;h=22386bcc697c2e3c64767ad99dd9fafaaa5d206f;hp=2c621bbe1da5b94bf9dd13f40d97bd27ef7b7c97;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/pipelinepdscommand.h b/pipelinepdscommand.h
index 2c621bb..22386bc 100644
--- a/pipelinepdscommand.h
+++ b/pipelinepdscommand.h
@@ -26,9 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pipeline.pds";	}
 	string getCommandCategory()		{ return "Hidden";			}
-	string getOutputFileNameTag(string, string) { return ""; }
 	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Pipeline.pds"; }
+    string getOutputPattern(string) { return ""; }	
+	string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pipeline.pds"; }
 	string getDescription()		{ return "pat's pipeline"; }