X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=pintail.cpp;fp=pintail.cpp;h=af64c25ce290a808a5edc8295645bc16bf277856;hp=f6e7aa5b8db516d29dd7a3366d8ea32a603633ca;hb=b9553248b33ebd169c6aee375c1cc1a9dda61848;hpb=783b9ef8e739307aed392f35970701f6b53390fb

diff --git a/pintail.cpp b/pintail.cpp
index f6e7aa5..af64c25 100644
--- a/pintail.cpp
+++ b/pintail.cpp
@@ -170,13 +170,13 @@ int Pintail::doPrep() {
 			string noOutliers, outliers;
 			
 			if ((!filter) && (seqMask == "")) {
-				noOutliers = templateFileName + "pintail.quan";
+				noOutliers = m->getRootName(m->getSimpleName(templateFileName)) + "pintail.quan";
 			}else if ((!filter) && (seqMask != "")) { 
-				noOutliers =templateFileName + "pintail.masked.quan";
+				noOutliers =m->getRootName(m->getSimpleName(templateFileName)) + "pintail.masked.quan";
 			}else if ((filter) && (seqMask != "")) { 
-				noOutliers = templateFileName + "pintail.filtered." + m->getSimpleName(m->getRootName(fastafile)) + "masked.quan";
+				noOutliers = m->getRootName(m->getSimpleName(templateFileName)) + "pintail.filtered." + m->getSimpleName(m->getRootName(fastafile)) + "masked.quan";
 			}else if ((filter) && (seqMask == "")) { 
-				noOutliers = templateFileName + "pintail.filtered." + m->getSimpleName(m->getRootName(fastafile)) + "quan";
+				noOutliers = m->getRootName(m->getSimpleName(templateFileName)) + "pintail.filtered." + m->getSimpleName(m->getRootName(fastafile)) + "quan";
 			}
 
 			decalc->removeObviousOutliers(quantilesMembers, templateSeqs.size());