X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=parsimonycommand.h;h=7f7ad893b74140087248edfd7deb7b8c3441e671;hp=38a7505125e52b39ad37f36df592dfc9cac3b54c;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d

diff --git a/parsimonycommand.h b/parsimonycommand.h
index 38a7505..7f7ad89 100644
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "parsimony";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Slatkin M, Maddison WP (1989). A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-13. \nSlatkin M, Maddison WP (1990). Detecting isolation by distance using phylogenies of genes. Genetics 126: 249-60. \nMartin AP (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-82. \nSchloss PD, Handelsman J (2006). Introducing TreeClimber, a test to compare microbial community structure. Appl Environ Microbiol 72: 2379-84.\nhttp://www.mothur.org/wiki/Parsimony"; }
 	string getDescription()		{ return "generic test that describes whether two or more communities have the same structure"; }