X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=parselistscommand.h;h=84abc85d46e0bc3fddd916a0095c4b45aa44dbd1;hp=1faeaeb9f31f13ce0b3a5e4f1fbbe1f524ac6501;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/parselistscommand.h b/parselistscommand.h
index 1faeaeb..84abc85 100644
--- a/parselistscommand.h
+++ b/parselistscommand.h
@@ -26,8 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "parse.list";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Parse.list"; }
 	string getDescription()		{ return "parses a list file by group"; }
 	
@@ -39,10 +40,10 @@ private:
 		
 	ListVector* list;
 	GroupMap* groupMap;
-	InputData* input;
+    CountTable ct;
 	
 	ofstream out;
-	string outputDir, listfile, groupfile, label;
+	string outputDir, listfile, groupfile, label, countfile;
 	set<string> labels;
 	bool abort, allLines;
 	vector<string> outputNames;