X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=parsefastaqcommand.h;h=5ae6b9c482fe6b4022bb4d4c5d4ae2e79ea3aad8;hp=b4d90e542a98f329dd166a93c54d57852e0f54dd;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e diff --git a/parsefastaqcommand.h b/parsefastaqcommand.h index b4d90e5..5ae6b9c 100644 --- a/parsefastaqcommand.h +++ b/parsefastaqcommand.h @@ -21,7 +21,7 @@ public: ~ParseFastaQCommand() {} vector setParameters(); - string getCommandName() { return "parse.fastq"; } + string getCommandName() { return "fastq.info"; } string getCommandCategory() { return "Sequence Processing"; } string getHelpString(); @@ -36,7 +36,7 @@ private: vector outputNames; string outputDir, fastaQFile, format; - bool abort, fasta, qual; + bool abort, fasta, qual, pacbio; vector convertQual(string); vector convertTable;