X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=overlap.cpp;h=40b49f88bfe4d5cda9f123690253f87cda9ce61f;hp=9645e7a748ce72417f8c8bcbd272ac38dde1aca4;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=526a868606faa50caf86e7399f7554c0335b39e5

diff --git a/overlap.cpp b/overlap.cpp
index 9645e7a..40b49f8 100644
--- a/overlap.cpp
+++ b/overlap.cpp
@@ -12,7 +12,6 @@
  *	issues at the 5' end of the alignment seem to take care of themselves in the traceback.
  *
  */
-using namespace std;
 
 #include "alignmentcell.hpp"
 #include "overlap.hpp"
@@ -61,7 +60,7 @@ void Overlap::setOverlap(vector<vector<AlignmentCell> >& alignment, const int nA
 	
 	int rowIndex = maxRow(alignment, band);		//	get the index for the row with the highest right hand side score
 	int colIndex = maxColumn(alignment, band);	//	get the index for the column with the highest bottom row score
-	
+		
 	int row = lB-1;
 	int column = lA-1;