X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=onegapignore.h;h=785272e08c69a3e1491d5d1d2792bbc9ba3eda5d;hp=af284fcc6857a3c5a42545ca6c78c22cded9424d;hb=f2d22832d127f781989c98457f42e94aea96075f;hpb=7ae40733a270f73ec8a331540cc7f28fd60b24fc

diff --git a/onegapignore.h b/onegapignore.h
index af284fc..785272e 100644
--- a/onegapignore.h
+++ b/onegapignore.h
@@ -34,14 +34,14 @@ public:
 		for(int i=0;i<alignLength;i++){
 			if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
 				start = i;
-				cout << "start: " << start << endl;
+//				cout << "start: " << start << endl;
 				break;
 			}
 		}
 		for(int i=alignLength-1;i>=0;i--){
 			if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
 				end = i;
-				cout << "end: " << end << endl;
+//				cout << "end: " << end << endl;
 				break;
 			}
 		}