X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=normalizesharedcommand.h;h=53bcd6b5e4aac7d0a463fa436fc8ed6346f5f069;hp=c25274119ac3c918dcfa8ef584b05bd3f9310bc9;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf

diff --git a/normalizesharedcommand.h b/normalizesharedcommand.h
index c252741..53bcd6b 100644
--- a/normalizesharedcommand.h
+++ b/normalizesharedcommand.h
@@ -24,7 +24,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "normalize.shared";		}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Normalize.shared"; }
 	string getDescription()		{ return "normalize samples in a shared or relabund file"; }
 
@@ -44,8 +46,8 @@ private:
 	int norm;
 	vector<string> Groups, outputNames;
 		
-	int normalize(vector<SharedRAbundVector*>&, ofstream&);
-	int normalize(vector<SharedRAbundFloatVector*>&, ofstream&);
+	int normalize(vector<SharedRAbundVector*>&);
+	int normalize(vector<SharedRAbundFloatVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);