X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=normalizesharedcommand.h;h=53bcd6b5e4aac7d0a463fa436fc8ed6346f5f069;hp=6332fd7fe1f36f19cd232cde99d9c6629fc00ca5;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77

diff --git a/normalizesharedcommand.h b/normalizesharedcommand.h
index 6332fd7..53bcd6b 100644
--- a/normalizesharedcommand.h
+++ b/normalizesharedcommand.h
@@ -24,8 +24,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "normalize.shared";		}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Normalize.shared"; }
+	string getDescription()		{ return "normalize samples in a shared or relabund file"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -42,8 +46,8 @@ private:
 	int norm;
 	vector<string> Groups, outputNames;
 		
-	int normalize(vector<SharedRAbundVector*>&, ofstream&);
-	int normalize(vector<SharedRAbundFloatVector*>&, ofstream&);
+	int normalize(vector<SharedRAbundVector*>&);
+	int normalize(vector<SharedRAbundFloatVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);