X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=newcommandtemplate.h;h=8d1173192b35189bc7151d81b6c23bacc7f31a57;hp=5fd36b17af596785a2ff99d065ca02e3372d1e71;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=42d411d3362186465347aeabdd3155bd3259671e

diff --git a/newcommandtemplate.h b/newcommandtemplate.h
index 5fd36b1..8d11731 100644
--- a/newcommandtemplate.h
+++ b/newcommandtemplate.h
@@ -35,8 +35,10 @@ public:
     vector<string> setParameters();
     string getCommandName()			{ return "newCommandNameToBeSeenByUser";			}
     string getCommandCategory()		{ return "commandCategory";		} 
+    
+    string getOutputPattern(string);
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getHelpString();	
+	string getHelpString();	
     string getCitation() { return "http://www.mothur.org/wiki/newCommandNameToBeSeenByUser"; }
     string getDescription()		{ return "brief description"; }