X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=nameassignment.cpp;h=1e42111e574baacf2eb2f5c3407416c9029f9041;hp=3d99551cc6a2a5f01932329c34c339a6fa5d9450;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=260ae19c36cb11a53ddc5a75b5e507f8dd8b31d6

diff --git a/nameassignment.cpp b/nameassignment.cpp
index 3d99551..1e42111 100644
--- a/nameassignment.cpp
+++ b/nameassignment.cpp
@@ -9,20 +9,21 @@ NameAssignment::NameAssignment(string nameMapFile){
 	m->openInputFile(nameMapFile, fileHandle);
 	
 }
-
+//**********************************************************************************************************************
+NameAssignment::NameAssignment(){ m = MothurOut::getInstance(); }
 //**********************************************************************************************************************
 
 void NameAssignment::readMap(){
 	try{
 		string firstCol, secondCol, skip;
 	//	int index = 0;
-	
+        
 		
 		map<string, int>::iterator itData;
 		int rowIndex = 0;
 		
 		while(fileHandle){
-			fileHandle >> firstCol;				//read from first column
+			fileHandle >> firstCol;	m->gobble(fileHandle);			//read from first column
 			fileHandle >> secondCol;			//read from second column
 						
 			itData = (*this).find(firstCol);