X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=mgclustercommand.h;h=3865bb20811a0ac29e29e0fec02392268ea0a657;hp=008bd222a0a91869e14895738ea852b383c0395f;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/mgclustercommand.h b/mgclustercommand.h
index 008bd22..3865bb2 100644
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -56,9 +56,9 @@ private:
 	string blastfile, method, namefile, countfile, overlapFile, distFile, outputDir;
 	ofstream sabundFile, rabundFile, listFile;
 	double cutoff;
-	float penalty;
+	float penalty, adjust;
 	int precision, length, precisionLength;
-	bool abort, minWanted, hclusterWanted, merge, hard;
+	bool abort, minWanted, hclusterWanted, merge, hard, cutoffSet;
 	
 	void printData(ListVector*);
 	ListVector* mergeOPFs(map<string, int>, float);