X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=matrixoutputcommand.cpp;h=7fbd83059dbc7ef882e889cbc7b9a7d8563d4b0c;hp=4ea8f021d3046a3f25be73b201869a73b98898ce;hb=8f7f4fc08b8c70d9ef0f79607813dba4e926e102;hpb=8bcd146863e2a44d6d4fb5dee2d3f17e975deb45

diff --git a/matrixoutputcommand.cpp b/matrixoutputcommand.cpp
index 4ea8f02..7fbd830 100644
--- a/matrixoutputcommand.cpp
+++ b/matrixoutputcommand.cpp
@@ -188,6 +188,11 @@ MatrixOutputCommand::MatrixOutputCommand(string option)  {
 				 if (calc == "default")  {  calc = "jclass-thetayc";  }
 			}
 			m->splitAtDash(calc, Estimators);
+			if (m->inUsersGroups("citation", Estimators)) { 
+				ValidCalculators validCalc; validCalc.printCitations(Estimators); 
+				//remove citation from list of calcs
+				for (int i = 0; i < Estimators.size(); i++) { if (Estimators[i] == "citation") {  Estimators.erase(Estimators.begin()+i); break; } }
+			}
 
 			if (abort == false) {