X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=mantelcommand.h;h=33fa3ea21e91fa2663994947720080933fad3d61;hp=adffda857c4e4aa64ceb38c502f011d7ecefed2e;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf diff --git a/mantelcommand.h b/mantelcommand.h index adffda8..33fa3ea 100644 --- a/mantelcommand.h +++ b/mantelcommand.h @@ -22,9 +22,11 @@ public: vector setParameters(); string getCommandName() { return "mantel"; } string getCommandCategory() { return "Hypothesis Testing"; } + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Mantel"; } - string getDescription() { return "mantel"; } + string getDescription() { return "Mantel’s test for correlation between matrices"; } int execute(); void help() { m->mothurOut(getHelpString()); }