X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=makegroupcommand.cpp;h=c427db5b385c166176f3f3a5272df2f72c3400b8;hp=611f00f8cd54a942d6646eda9cc776933d44742b;hb=191ae1be0679d5cf4eda950b3b1bf26fb7dd503d;hpb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd

diff --git a/makegroupcommand.cpp b/makegroupcommand.cpp
index 611f00f..c427db5 100644
--- a/makegroupcommand.cpp
+++ b/makegroupcommand.cpp
@@ -25,6 +25,7 @@ vector<string> MakeGroupCommand::getValidParameters(){
 //**********************************************************************************************************************
 MakeGroupCommand::MakeGroupCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["group"] = tempOutNames;