X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=makebiomcommand.h;h=1ff398518c850c0447ff58c904b1ceddf9b6c3d3;hp=7ea381f145af343213a25bd32109d20fa1fb1dee;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/makebiomcommand.h b/makebiomcommand.h
index 7ea381f..1ff3985 100644
--- a/makebiomcommand.h
+++ b/makebiomcommand.h
@@ -36,14 +36,14 @@ public:
 	
 private:
     
-	string sharedfile, contaxonomyfile, metadatafile, groups, outputDir, format, label;
+	string sharedfile, contaxonomyfile, metadatafile, groups, outputDir, format, label, referenceTax;
 	vector<string> outputNames, Groups, sampleMetadata;
 	set<string> labels;
     
-	bool abort, allLines;
+	bool abort, allLines, picrust;
     
     int getBiom(vector<SharedRAbundVector*>&);
-    vector<string> getMetaData(vector<SharedRAbundVector*>&);
+    vector<string> getMetaData(vector<SharedRAbundVector*>&, vector<string>&);
     vector<string> parseTax(string tax, vector<string>& scores);
     int getSampleMetaData(vector<SharedRAbundVector*>&);
 };