X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=listseqscommand.h;h=9d320d9e9a94ad031826bc547d42a03b30e8ec30;hp=8e4cce3c932100ff1ab88d49b346ff87e7791a06;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d

diff --git a/listseqscommand.h b/listseqscommand.h
index 8e4cce3..9d320d9 100644
--- a/listseqscommand.h
+++ b/listseqscommand.h
@@ -23,8 +23,9 @@ class ListSeqsCommand : public Command {
 		vector<string> setParameters();
 		string getCommandName()			{ return "list.seqs";				}
 		string getCommandCategory()		{ return "Sequence Processing";		}
-		string getOutputFileNameTag(string, string);
+		
 	string getHelpString();	
+    string getOutputPattern(string);	
 		string getCitation() { return "http://www.mothur.org/wiki/List.seqs"; }
 		string getDescription()		{ return "lists sequences from a list, fasta, name, group, alignreport or taxonomy file"; }
 
@@ -34,7 +35,7 @@ class ListSeqsCommand : public Command {
 	
 	private:
 		vector<string> names, outputNames;
-		string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile;
+		string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile, fastqfile;
 		bool abort;
 		
 		int readFasta();
@@ -44,7 +45,7 @@ class ListSeqsCommand : public Command {
 		int readList();
 		int readTax();
         int readCount();
-		
+        int readFastq();
 };
 
 #endif