X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=listseqscommand.cpp;h=cf884705cb26f341ef08713b118af32fd49c5bdf;hp=8a1effeb7deaf02f6931633f1abfc41f355a9957;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7

diff --git a/listseqscommand.cpp b/listseqscommand.cpp
index 8a1effe..cf88470 100644
--- a/listseqscommand.cpp
+++ b/listseqscommand.cpp
@@ -297,7 +297,7 @@ int ListSeqsCommand::readFasta(){
 		//ofstream out;
 		//string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
 		//m->openOutputFile(newFastaName, out);
-		//int count = 1;
+		int count = 1;
 		//string lastName = "";
 		
 		while(!in.eof()){
@@ -310,7 +310,7 @@ int ListSeqsCommand::readFasta(){
 			if (name != "") {  names.push_back(name);  }
 			
 			m->gobble(in);
-			//count++;
+			if (m->debug) { count++; cout << "[DEBUG]: count = " + toString(count) + ", name = " + currSeq.getName() + "\n"; }
 		}
 		in.close();	
 		//out.close();
@@ -415,7 +415,7 @@ int ListSeqsCommand::readGroup(){
 int ListSeqsCommand::readCount(){
 	try {
 		CountTable ct;
-		ct.readTable(countfile);
+		ct.readTable(countfile, false);
         
         if (m->control_pressed) { return 0; }