X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=listotulabelscommand.h;h=d38091464654a635c5c03dc964ed8fe4fe0b73df;hp=ea41539adb021cdc56fd6175f7845f2ae70363e4;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=4c302368ef34f0d897afefc7853edf86fb45b9f3

diff --git a/listotulabelscommand.h b/listotulabelscommand.h
index ea41539..d380914 100644
--- a/listotulabelscommand.h
+++ b/listotulabelscommand.h
@@ -12,6 +12,7 @@
 
 #include "command.hpp"
 #include "sharedrabundvector.h"
+#include "listvector.hpp"
 
 /**************************************************************************************************/
 
@@ -25,22 +26,25 @@ public:
     string getCommandName()			{ return "list.otulabels";          }
     string getCommandCategory()		{ return "OTU-Based Approaches";	} 
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getHelpString();	
+    
+	string getHelpString();	
+    string getOutputPattern(string);	
     string getCitation() { return "http://www.mothur.org/wiki/List.otulabels"; }
-    string getDescription()		{ return "lists otu labels from shared or relabund file. Can be used with output from classify.otu, otu.association, or corr.axes to select specific otus."; }
+    string getDescription()		{ return "lists otu labels from shared or relabund file. Can be used by get.otulabels with output from classify.otu, otu.association, or corr.axes to select specific otus."; }
     
     int execute(); 
     void help() { m->mothurOut(getHelpString()); }	
     
 private:
     bool abort, allLines;
-    string outputDir, sharedfile, relabundfile, label, inputFileName, format;
+    string outputDir, sharedfile, relabundfile, label, inputFileName, format, listfile;
     vector<string> outputNames;
     vector<string> Groups;
     set<string> labels;
     
     int createList(vector<SharedRAbundFloatVector*>&);
     int createList(vector<SharedRAbundVector*>&);
+    int createList(ListVector*&);
 
 };