X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=listotulabelscommand.h;h=d38091464654a635c5c03dc964ed8fe4fe0b73df;hp=1b10331925c1c91d32e42b06bedcb3f225e32c5a;hb=615301e57c25e241356a9c2380648d117709458d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/listotulabelscommand.h b/listotulabelscommand.h
index 1b10331..d380914 100644
--- a/listotulabelscommand.h
+++ b/listotulabelscommand.h
@@ -12,6 +12,7 @@
 
 #include "command.hpp"
 #include "sharedrabundvector.h"
+#include "listvector.hpp"
 
 /**************************************************************************************************/
 
@@ -25,8 +26,9 @@ public:
     string getCommandName()			{ return "list.otulabels";          }
     string getCommandCategory()		{ return "OTU-Based Approaches";	} 
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getOutputFileNameTag(string, string);
+    
 	string getHelpString();	
+    string getOutputPattern(string);	
     string getCitation() { return "http://www.mothur.org/wiki/List.otulabels"; }
     string getDescription()		{ return "lists otu labels from shared or relabund file. Can be used by get.otulabels with output from classify.otu, otu.association, or corr.axes to select specific otus."; }
     
@@ -35,13 +37,14 @@ public:
     
 private:
     bool abort, allLines;
-    string outputDir, sharedfile, relabundfile, label, inputFileName, format;
+    string outputDir, sharedfile, relabundfile, label, inputFileName, format, listfile;
     vector<string> outputNames;
     vector<string> Groups;
     set<string> labels;
     
     int createList(vector<SharedRAbundFloatVector*>&);
     int createList(vector<SharedRAbundVector*>&);
+    int createList(ListVector*&);
 
 };