X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=libshuffcommand.h;h=9148576b9135826ffe33b084d833525af182bb5a;hp=96e68f39b7caee9f369a2068ac6e7519cadfef45;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=8f7f4fc08b8c70d9ef0f79607813dba4e926e102

diff --git a/libshuffcommand.h b/libshuffcommand.h
index 96e68f3..9148576 100644
--- a/libshuffcommand.h
+++ b/libshuffcommand.h
@@ -26,9 +26,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "libshuff";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001). Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-6. \nSchloss PD, Larget BR, Handelsman J (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-92. \nhttp://www.mothur.org/wiki/Libshuff"; }
-	
+	string getDescription()		{ return "a generic test that describes whether two or more communities have the same structure using the Cramer-von Mises test statistic"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }