X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=libshuffcommand.h;h=9148576b9135826ffe33b084d833525af182bb5a;hp=81ae17ab644287e75a2de30f88427a67937b549d;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/libshuffcommand.h b/libshuffcommand.h
index 81ae17a..9148576 100644
--- a/libshuffcommand.h
+++ b/libshuffcommand.h
@@ -26,8 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "libshuff";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001). Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-6. \nSchloss PD, Larget BR, Handelsman J (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-92. \nhttp://www.mothur.org/wiki/Libshuff"; }
 	string getDescription()		{ return "a generic test that describes whether two or more communities have the same structure using the Cramer-von Mises test statistic"; }