X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=kmer.hpp;h=9a3c5a0091b868b7f61ae8043546f39b27e212cb;hp=75ec5384ad2d3724bc61688616a7eb2ca6c9d252;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05

diff --git a/kmer.hpp b/kmer.hpp
index 75ec538..9a3c5a0 100644
--- a/kmer.hpp
+++ b/kmer.hpp
@@ -10,6 +10,8 @@
  *
  */
 
+#include "mothur.h"
+
 /**************************************************************************************************/
 
 class Kmer {
@@ -18,11 +20,11 @@ public:
 	Kmer(int);
 	string getKmerString(string);
 	int getKmerNumber(string, int);
-	
-	
-private:
 	string getKmerBases(int);
+	int getReverseKmerNumber(int);
+	vector< map<int, int> > getKmerCounts(string sequence);  //for use in chimeraCheck
 	
+private:
 	char getASCII(int);
 	int getNumber(char);
 	int kmerSize;
@@ -32,4 +34,5 @@ private:
 
 /**************************************************************************************************/
 
+
 #endif