X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=inputdata.h;h=658b21d8cdfe649d8434e883655ecd18922f2554;hp=abb343e98eb02677006af4316fbc10e4693f3a2a;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=58cf1d08fee8c64334979075fa57bcafb035a2ed

diff --git a/inputdata.h b/inputdata.h
index abb343e..658b21d 100644
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,17 +1,14 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
 #include "sharedlistvector.h"
+#include "sharedordervector.h"
 #include "listvector.hpp"
+#include "sharedrabundfloatvector.h"
 
 
-using namespace std;
-
 class InputData {
 	
 public:
@@ -19,9 +16,22 @@ public:
 	InputData(string, string, string);
 	~InputData();
 	ListVector* getListVector();
+	ListVector* getListVector(string);  //pass the label you want
+	ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
 	SharedListVector* getSharedListVector();
-	OrderVector* getOrderVector();
+	SharedListVector* getSharedListVector(string);  //pass the label you want
+	OrderVector* getOrderVector(); 
+	OrderVector* getOrderVector(string); //pass the label you want
+	SharedOrderVector* getSharedOrderVector();
+	SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
 	SAbundVector* getSAbundVector();
+	SAbundVector* getSAbundVector(string);  //pass the label you want
+	RAbundVector* getRAbundVector();
+	RAbundVector* getRAbundVector(string);  //pass the label you want
+	vector<SharedRAbundVector*> getSharedRAbundVectors();
+	vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
 	
 private:
 	string format;
@@ -30,8 +40,12 @@ private:
 	ListVector* list;
 	SharedListVector* SharedList;
 	OrderVector* output;
+	SharedOrderVector* SharedOrder;
 	SAbundVector* sabund;
+	RAbundVector* rabund;
 	map<string,int> orderMap;
+	string filename;
+	MothurOut* m;
 };