X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=inputdata.h;h=658b21d8cdfe649d8434e883655ecd18922f2554;hp=46d1655cdd62f4578b5bf82a114143a31454a689;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05

diff --git a/inputdata.h b/inputdata.h
index 46d1655..658b21d 100644
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,16 +1,14 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
+#include "sharedlistvector.h"
+#include "sharedordervector.h"
 #include "listvector.hpp"
+#include "sharedrabundfloatvector.h"
 
 
-using namespace std;
-
 class InputData {
 	
 public:
@@ -18,18 +16,37 @@ public:
 	InputData(string, string, string);
 	~InputData();
 	ListVector* getListVector();
-	OrderVector* getOrderVector();
+	ListVector* getListVector(string);  //pass the label you want
+	ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
+	SharedListVector* getSharedListVector();
+	SharedListVector* getSharedListVector(string);  //pass the label you want
+	OrderVector* getOrderVector(); 
+	OrderVector* getOrderVector(string); //pass the label you want
+	SharedOrderVector* getSharedOrderVector();
+	SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
 	SAbundVector* getSAbundVector();
+	SAbundVector* getSAbundVector(string);  //pass the label you want
+	RAbundVector* getRAbundVector();
+	RAbundVector* getRAbundVector(string);  //pass the label you want
+	vector<SharedRAbundVector*> getSharedRAbundVectors();
+	vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
 	
 private:
 	string format;
 	ifstream fileHandle;
 	DataVector* input;
 	ListVector* list;
+	SharedListVector* SharedList;
 	OrderVector* output;
+	SharedOrderVector* SharedOrder;
 	SAbundVector* sabund;
+	RAbundVector* rabund;
 	map<string,int> orderMap;
+	string filename;
+	MothurOut* m;
 };
 
 
-#endif
\ No newline at end of file
+#endif