X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=homovacommand.h;h=22741e979ec9b0847ca660f5ab41eab49fe715d5;hp=4afaeb8e3120b42558f5e555c9237474b27a510e;hb=615301e57c25e241356a9c2380648d117709458d;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf

diff --git a/homovacommand.h b/homovacommand.h
index 4afaeb8..22741e9 100644
--- a/homovacommand.h
+++ b/homovacommand.h
@@ -26,7 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "homova";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Stewart CN, Excoffier L (1996). Assessing population genetic structure and variability with RAPD data: Application to Vaccinium macrocarpon (American Cranberry). J Evol Biol 9: 153-71. \nhttp://www.mothur.org/wiki/Homova"; }
 	string getDescription()		{ return "homova"; }
 
@@ -40,7 +42,7 @@ private:
 	map<string, vector<int> > getRandomizedGroups(map<string, vector<int> >);
 
 	bool abort;
-	vector<string> outputNames;
+	vector<string> outputNames, Sets;
 
 	string outputDir, inputDir, designFileName, phylipFileName;
 	GroupMap* designMap;