X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=helpcommand.h;h=aedb7b5a626570f39f16d420ca7bd82a0034f740;hp=58356d13fa21b6f0c81377915618fff9c277473b;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=51cf89e90eef8b300c2786eb1560dd89e6e83445

diff --git a/helpcommand.h b/helpcommand.h
index 58356d1..aedb7b5 100644
--- a/helpcommand.h
+++ b/helpcommand.h
@@ -12,23 +12,30 @@
 /* This class is designed to aid the user in running mothur. */
 
 #include "command.hpp"
-#include "globaldata.hpp"
-#include "validcommands.h"
-#include "validcalculator.h"
-
+#include "commandfactory.hpp"
 
 class HelpCommand : public Command {
 	
 public:
-	HelpCommand();
-	~HelpCommand();
-	int execute();
-private:
-	GlobalData* globaldata;
-	ValidCommands* validCommands;
-	ValidCalculators* validCalcs;
+	HelpCommand(string);
+	HelpCommand() {}
+	~HelpCommand(){}
+	
+	vector<string> setParameters()	{ return outputNames;	} //dummy, doesn't really do anything	
+	string getCommandName()			{ return "help";		}
+	string getCommandCategory()		{ return "Hidden";		}
+	string getHelpString() { return "For more information about a specific command type 'commandName(help)' i.e. 'cluster(help)'"; }	
+     string getOutputPattern(string) { return "";                }
+	string getCitation() { return "no citation"; }
+	string getDescription()		{ return "help"; }
+
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
+	CommandFactory* validCommands;
+	vector<string> outputNames;	
 		
 };