X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=heatmapsimcommand.h;h=f421fdc5bf2c3ff8aed22a197afc3309a86b4e34;hp=74e20bebb35863128f72c3d85a8398c87ad9a5b2;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index 74e20be..f421fdc 100644
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -26,7 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "heatmap.sim";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Heatmap.sim"; }
 	string getDescription()		{ return "generate a heatmap indicating the pairwise distance between multiple samples using a variety of calculators"; }
 
@@ -42,7 +44,7 @@ private:
 	OptionParser* parser;
 	bool abort, allLines;
 	set<string> labels; //holds labels to be used
-	string format, groups, label, calc, sharedfile, phylipfile, columnfile, namefile, outputDir, inputfile;
+	string format, groups, label, calc, sharedfile, phylipfile, columnfile, countfile, namefile, outputDir, inputfile;
 	vector<string> Estimators, Groups, outputNames;
 	int fontsize;