X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=heatmap.h;h=922147ccb62d54f154f34796a7ad7786717841d6;hp=e236ce389795e00e20fce97cd645377e83657c1b;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=69180c6a4fd3c9ad48974b402d398efe61a58fa7

diff --git a/heatmap.h b/heatmap.h
index e236ce3..922147c 100644
--- a/heatmap.h
+++ b/heatmap.h
@@ -9,43 +9,72 @@
  *
  */
 
-using namespace std;
-
-#include "ordervector.hpp"
 #include "rabundvector.hpp"
 #include "sharedrabundvector.h"
-#include "sharedordervector.h"
+#include "sharedrabundfloatvector.h"
 #include "datavector.hpp"
-#include "globaldata.hpp"
+
+
+/***********************************************************************/
+struct binCount {
+		int bin;
+		int abund;
+		binCount(int i, int j) : bin(i), abund(j) {}
+};
+/***********************************************************************/
+struct binCountFloat {
+		int bin;
+		float abund;
+		binCountFloat(int i, float j) : bin(i), abund(j) {}
+};
 
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinCounts(binCount left, binCount right){
+	return (left.abund > right.abund);	
+}
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinFloatCounts(binCountFloat left, binCountFloat right){
+	return (left.abund > right.abund);	
+}
 /***********************************************************************/
 
 class HeatMap {
 	
 	public:
-		HeatMap();
+		HeatMap(string, string, int, int, string, string);
 		~HeatMap(){};
 	
-		void getPic(OrderVector*);
-		void getPic(SharedOrderVector*);
+		string getPic(RAbundVector*);
+		string getPic(vector<SharedRAbundVector*>);
+		string getPic(vector<SharedRAbundFloatVector*>);
 
 	private:
-		void getSharedVectors(SharedOrderVector*);
-		void sortSharedVectors();
-		
-		GlobalData* globaldata;
-		vector<SharedRAbundVector*> lookup;
-		RAbundVector rabund;
-		string format, sorted, groupComb;
+		vector<string> sortSharedVectors(vector<SharedRAbundVector*>& );
+		vector<string> sortSharedVectors(vector<SharedRAbundFloatVector*>& );
+		int sortRabund(RAbundVector*&);
+		void printLegend(int, float);
+
+		string format, sorted, groupComb, scaler, outputDir, inputfile;
 		ofstream outsvg;
-		map<int, string> colorScale;
-		map<int, string>::iterator it;
+		MothurOut* m;
+		int numOTU, fontSize;
+		
+		map<int, int> orderTopGroup(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopGroup(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundFloatVector*>&);
 
 			
 };
+
 /***********************************************************************/
 
 #endif
 
 
 
+