X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=heatmap.h;h=2b491767d57e48c4a05728aa6a48cbfc6939b38f;hp=c26684e3cd832b3c57d0671cb0bb11e8983e247c;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=2657127a3e1f3b5463f2b3a3b49bc19843f5c9d2

diff --git a/heatmap.h b/heatmap.h
index c26684e..2b49176 100644
--- a/heatmap.h
+++ b/heatmap.h
@@ -9,44 +9,72 @@
  *
  */
 
-using namespace std;
-
-#include "ordervector.hpp"
 #include "rabundvector.hpp"
 #include "sharedrabundvector.h"
-#include "sharedordervector.h"
+#include "sharedrabundfloatvector.h"
 #include "datavector.hpp"
-#include "globaldata.hpp"
+
+
+/***********************************************************************/
+struct binCount {
+		int bin;
+		int abund;
+		binCount(int i, int j) : bin(i), abund(j) {}
+};
+/***********************************************************************/
+struct binCountFloat {
+		int bin;
+		float abund;
+		binCountFloat(int i, float j) : bin(i), abund(j) {}
+};
 
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinCounts(binCount left, binCount right){
+	return (left.abund > right.abund);	
+}
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinFloatCounts(binCountFloat left, binCountFloat right){
+	return (left.abund > right.abund);	
+}
 /***********************************************************************/
 
 class HeatMap {
 	
 	public:
-		HeatMap();
+		HeatMap(string, string, int, int, string, string);
 		~HeatMap(){};
 	
-		void getPic(OrderVector*);
-		void getPic(SharedOrderVector*);
+		string getPic(RAbundVector*);
+		string getPic(vector<SharedRAbundVector*>);
+		string getPic(vector<SharedRAbundFloatVector*>);
 
 	private:
-		void getSharedVectors(SharedOrderVector*);
-		void sortSharedVectors();
-		
-		GlobalData* globaldata;
-		vector<SharedRAbundVector*> lookup;
-		RAbundVector rabund;
-		string format;
+		int sortSharedVectors(vector<SharedRAbundVector*>& );
+		int sortSharedVectors(vector<SharedRAbundFloatVector*>& );
+		int sortRabund(RAbundVector*&);
+		void printLegend(int, float);
+
+		string format, sorted, groupComb, scaler, outputDir, inputfile;
 		ofstream outsvg;
-		map<int, string> colorScale;
-		map<int, string>::iterator it;
-		string groupComb;
+		MothurOut* m;
+		int numOTU, fontSize;
+		
+		map<int, int> orderTopGroup(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopGroup(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundFloatVector*>&);
 
 			
 };
+
 /***********************************************************************/
 
 #endif
 
 
 
+