X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=heatmap.h;h=2b491767d57e48c4a05728aa6a48cbfc6939b38f;hp=528c96416211a223e710467dd6baeb4cdb063c8f;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=e2373397d9316500ee0d196e60dcab75d208511a

diff --git a/heatmap.h b/heatmap.h
index 528c964..2b49176 100644
--- a/heatmap.h
+++ b/heatmap.h
@@ -9,35 +9,65 @@
  *
  */
 
-using namespace std;
-
-#include "ordervector.hpp"
 #include "rabundvector.hpp"
 #include "sharedrabundvector.h"
-#include "sharedordervector.h"
+#include "sharedrabundfloatvector.h"
 #include "datavector.hpp"
-#include "globaldata.hpp"
-#include "sharedutilities.h"
 
+
+/***********************************************************************/
+struct binCount {
+		int bin;
+		int abund;
+		binCount(int i, int j) : bin(i), abund(j) {}
+};
+/***********************************************************************/
+struct binCountFloat {
+		int bin;
+		float abund;
+		binCountFloat(int i, float j) : bin(i), abund(j) {}
+};
+
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinCounts(binCount left, binCount right){
+	return (left.abund > right.abund);	
+}
+/***********************************************************************/
+//sorts highest abund to lowest
+inline bool comparebinFloatCounts(binCountFloat left, binCountFloat right){
+	return (left.abund > right.abund);	
+}
 /***********************************************************************/
 
 class HeatMap {
 	
 	public:
-		HeatMap();
-		~HeatMap(){ delete util; };
+		HeatMap(string, string, int, int, string, string);
+		~HeatMap(){};
 	
-		void getPic(OrderVector*);
-		void getPic(SharedOrderVector*);
+		string getPic(RAbundVector*);
+		string getPic(vector<SharedRAbundVector*>);
+		string getPic(vector<SharedRAbundFloatVector*>);
 
 	private:
-		void sortSharedVectors(vector<SharedRAbundVector*>& );
+		int sortSharedVectors(vector<SharedRAbundVector*>& );
+		int sortSharedVectors(vector<SharedRAbundFloatVector*>& );
+		int sortRabund(RAbundVector*&);
 		void printLegend(int, float);
 
-		GlobalData* globaldata;
-		SharedUtil* util;
-		string format, sorted, groupComb, scaler;
+		string format, sorted, groupComb, scaler, outputDir, inputfile;
 		ofstream outsvg;
+		MothurOut* m;
+		int numOTU, fontSize;
+		
+		map<int, int> orderTopGroup(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundVector*>&);
+		map<int, int> orderTopGroup(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderTopOtu(vector<SharedRAbundFloatVector*>&);
+		map<int, int> orderShared(vector<SharedRAbundFloatVector*>&);
+
 			
 };
 
@@ -47,3 +77,4 @@ class HeatMap {
 
 
 
+