X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=hclustercommand.h;h=d1074070420fc89347a65b8fa8c0448c953c8881;hp=f27837a312bd0b10eca4108352a95003e5ae2be4;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77

diff --git a/hclustercommand.h b/hclustercommand.h
index f27837a..d107407 100644
--- a/hclustercommand.h
+++ b/hclustercommand.h
@@ -38,9 +38,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "hcluster";	}
 	string getCommandCategory()		{ return "Clustering";	}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Hcluster"; }
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
+	string getDescription()		{ return "cluster your sequences into OTUs using a distance matrix"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }