X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=hclustercommand.h;h=1b8e9b7607df66c0a36621f31ced21772f36a909;hp=aeeb3bc9cb295d93bbec1c33f405dcab27e55673;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc

diff --git a/hclustercommand.h b/hclustercommand.h
index aeeb3bc..1b8e9b7 100644
--- a/hclustercommand.h
+++ b/hclustercommand.h
@@ -18,7 +18,7 @@
 #include "readcluster.h"
 
 /******************************************************************/
-//This command is an implementation of the HCluster algorythmn described in 
+//This command is an implementation of the HCluster algorithmn described in 
 //ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences by
 //Yijun Sun1,2,*, Yunpeng Cai2, Li Liu1, Fahong Yu1, Michael L. Farrell3, William McKendree3 
 //and William Farmerie1 1 
@@ -38,7 +38,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "hcluster";	}
 	string getCommandCategory()		{ return "Clustering";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
 	string getDescription()		{ return "cluster your sequences into OTUs using a distance matrix"; }